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260035 VU Multi-scale modeling of biomolecular systems (2025W)
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 04.09.2025 08:00 to Mo 22.09.2025 23:59
- Deregistration possible until Fr 17.10.2025 23:59
Details
max. 15 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
- Thursday 02.10. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 09.10. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 16.10. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 23.10. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 30.10. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 06.11. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 13.11. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 20.11. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 27.11. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 04.12. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 11.12. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 18.12. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 08.01. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 15.01. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
- Thursday 22.01. 11:30 - 14:00 Seminarraum 18 Kolingasse 14-16, OG02
Information
Aims, contents and method of the course
Assessment and permitted materials
The assessment will be done based on one graded homework (50% of the total grade) and a final presentation of a scientific paper from a multiscale modling topic in front of the colleagues during the last lectures (50% of the total grade). The graded homework will be assigned after about half of the semester and the presentation paper will be chosen by the student from a given selection.
Minimum requirements and assessment criteria
Minimum requirement: Active participation in the regular lecture meetings, submission of the graded homework and a final presentation of sufficient quality and depth of understanding. In numbers: 50% of the total pointsMark key:
100 - 89 points: mark 1
88 - 76 points: mark 2
75 - 63 points: mark 3
62 - 50 points: mark 4
< 50 points: fail
100 - 89 points: mark 1
88 - 76 points: mark 2
75 - 63 points: mark 3
62 - 50 points: mark 4
< 50 points: fail
Examination topics
Topic of the presentation paper.
Reading list
- Liu, Wing Kam, Karpov, Eduard G., and Park. Harold S., Nano Mechanics and
Materials: Theory, Multiscale Methods and Applications. John Wiley & Sons, Ltd, 2006.
- Wang, Yong, and Zhou, Ruhong., A Practical Guide to Recent Advances in Multiscale Modeling and Simulation of Biomolecules. AIP Publishing LLC, 2023.
Materials: Theory, Multiscale Methods and Applications. John Wiley & Sons, Ltd, 2006.
- Wang, Yong, and Zhou, Ruhong., A Practical Guide to Recent Advances in Multiscale Modeling and Simulation of Biomolecules. AIP Publishing LLC, 2023.
Association in the course directory
M-VAF A 2, M-VAF B, PM-SPEC
Last modified: Tu 21.10.2025 13:47
- Understand the key principles and methodologies in computational modeling of biomolecular systems.
- Develop an understanding of how models at different scales can be integrated to study complex biomolecular phenomena.
- Learn to critically assess the strengths and limitations of computational models in biomolecular research.Methods:
Weekly lectures with active participation of the students. Additional homework and relevant papers to read will be assigned. In the end of the course, students will select a pertinent research paper to study and present to their colleagues.