Universität Wien FIND

300242 SE Next generation sequencing data analysis (2016W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work

Details

max. 16 participants
Language: German, English

Lecturers

Classes

5 day block lecture 21 October 2016 - 28 October 2016
Venue: PC-Pool, Institute for Theoretical Chemistry / TBI, Währingerstraße 17, 2nd floor, 1090 Vienna
Initial meeting; 3 October 2016 9:00 AM Institute for Theoretical Chemistry / TBI, Währingerstraße 17, 1090 Vienna / Seminar room (ground floor)


Information

Aims, contents and method of the course

The scope of this lecture is to provide a solid introduction to basic next generation sequencing (NGS) analysis techniques. The target audience is students with little or no experience in practical bioinformatics analysis workflows. The following topics will be covered: Introduction to the Linux command line, handling of standard NGS data formats and analysis tools, including quality control, read mapping, differential gene expression analysis, and data visualization. This will be performed in the course of a small scientific project. After successfully attending the course, students will be capable of performing basic NGS analyses independently.

Assessment and permitted materials

Compulsory attendance. The evaluation consists of different performances: active participation, analysis results, written protocol.

Minimum requirements and assessment criteria

Examination topics

Reading list


Association in the course directory

PhD-MB 2, PhD-MB 7, MMB II-2, MMB W-2, MGE III-1, MGE III-2, MMEI III

Last modified: Fr 16.11.2018 00:18