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301185 VO Structural Bioinformatics I (2019W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Moodle

Registration/Deregistration

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Details

Language: English

Examination dates

Friday 17.01.2020 Friday 07.02.2020 Friday 27.03.2020 Thursday 28.05.2020

Lecturers

Classes (iCal) - next class is marked with N

Preliminary meeting with the students: Seminar Room VBC 5
Friday, October 11, 11-12

Lectures: Computer Room VBC 5
Mo 13 January 10-12, 13-16
Tu 14 January 10-12, 13-16
We 15 January 10-12, 13-16
Th 16 January 10-12, 13-16
Fr 17 January 10-12, 13-16

Exams:
Take an appointment

Friday 11.10. 11:00 - 12:00 STB/Seminarraum Strukturchemie Campus Vienna Biocenter 5, 1030 Wien (Kickoff Class)
Monday 13.01. 10:00 - 12:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Monday 13.01. 13:00 - 16:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Tuesday 14.01. 10:00 - 12:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Tuesday 14.01. 13:00 - 16:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Wednesday 15.01. 10:00 - 12:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Wednesday 15.01. 13:00 - 16:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Thursday 16.01. 10:00 - 12:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Thursday 16.01. 13:00 - 16:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Friday 17.01. 10:00 - 12:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien
Friday 17.01. 13:00 - 16:00 STB/EDV-Raum Campus Vienna Biocenter, 1030 Wien

Information

Aims, contents and method of the course

Programme Introduction to the molecular graphics and analysis of the most common protein folds with RasMol, Pymol and Chimera. Measurements of structural similarity between proteins, theory and applications (Dalilite, CE, PDBeFold and other tools). Databases of macromolecular structures: the Protein Data Bank, the wwPDB and the ePDB. Databases of structural domains: CATH, SCOP, and SCOP2. Databases of protein domains: Pfam, InterPro, InterProScan. Databases of computational models: ModBase and BioModels. Validation of experimental macromolecular structures. The problem of data redundancy.

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Examination topics

Reading list

Association in the course directory

MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB, PhD MB 1,UF MA BU 01, UF MA BU 04

Last modified: Mo 07.09.2020 15:22