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301185 VO Structural Bioinformatics I (2019W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie

Moodle

Registration/Deregistration

Details

Language: English

Examination dates

Friday 17.01.2020

Lecturers

Oliviero Carugo

Classes (iCal) - next class is marked with N

Preliminary meeting with the students: Seminar Room VBC 5
Friday, October 11, 11-12

Lectures: Computer Room VBC 5
Mo 13 January 10-12, 13-16
Tu 14 January 10-12, 13-16
We 15 January 10-12, 13-16
Th 16 January 10-12, 13-16
Fr 17 January 10-12, 13-16

Exams:
Take an appointment

    
    Friday
    11.10.
    11:00 - 12:00
    STB/Seminarraum Strukturchemie Campus Vienna Biocenter 5, 1030 Wien
    (Kickoff Class)
  
    Monday
    13.01.
    10:00 - 12:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Monday
    13.01.
    13:00 - 16:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Tuesday
    14.01.
    10:00 - 12:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Tuesday
    14.01.
    13:00 - 16:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Wednesday
    15.01.
    10:00 - 12:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Wednesday
    15.01.
    13:00 - 16:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Thursday
    16.01.
    10:00 - 12:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Thursday
    16.01.
    13:00 - 16:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Friday
    17.01.
    10:00 - 12:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien
    
    Friday
    17.01.
    13:00 - 16:00
    STB/EDV-Raum  Campus Vienna Biocenter, 1030 Wien

Information

Aims, contents and method of the course

Programme Introduction to the molecular graphics and analysis of the most common protein folds with RasMol, Pymol and Chimera. Measurements of structural similarity between proteins, theory and applications (Dalilite, CE, PDBeFold and other tools). Databases of macromolecular structures: the Protein Data Bank, the wwPDB and the ePDB. Databases of structural domains: CATH, SCOP, and SCOP2. Databases of protein domains: Pfam, InterPro, InterProScan. Databases of computational models: ModBase and BioModels. Validation of experimental macromolecular structures. The problem of data redundancy.

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Examination topics

Reading list

Association in the course directory

MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB, PhD MB 1,UF MA BU 01, UF MA BU 04

Last modified: Fr 24.01.2020 14:29