053521 VU Bioinformatics of sequences and structures (2024S)

6.00 ECTS (4.00 SWS), SPL 5 - Informatik und Wirtschaftsinformatik

Continuous assessment of course work

Moodle

Th 06.06. 13:15-18:15 Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Registration is open from Mo 12.02.2024 09:00 to Th 22.02.2024 09:00
Deregistration possible until Th 14.03.2024 23:59

Details

max. 25 participants

Language: English

Lecturers

Classes (iCal) - next class is marked with N

Please ignore the list of dates below. The lecture will be given by the three lecturers on the following dates:

First meeting (Vorbesprechung): Thu Mar 7 13:30-14:30 Online via Moodle

Sequence bioinformatics I (RNA; Ivo Hofacker):
Thu Apr 11, 13:15-16:30, PC-Unterrichtsraum 2, Währinger Straße 29 (1. OG)
Thu Apr 18, 13:15-16:30, PC-Unterrichtsraum 2, Währinger Straße 29 (1. OG)
Thu Apr 25, 13:15-16:30, PC-Unterrichtsraum 2, Währinger Straße 29 (1. OG)
Thu May 2, 13:15-16:30, PC-Unterrichtsraum 2, Währinger Straße 29 (1. OG)

Structural bioinformatics (Zagrovic):
Mandatory: May 6-8, 9 am – 5 pm
Optional part of the course, separate registration needed: May 9-17, 9 am – 5 pm
HS B in VBC5 (Campus Vienna Biocenter 5, 1030 Vienna) and CRC01&02 (VBC4/6.505 & 6.506) in the main Max Perutz building (Dr.-Bohrgasse 9, 1030 Vienna)

Sequence bioinformatics II (Sequence analysis and genomics; Thomas Rattei):
Thu May 23, 13:15-16:30 Uhr, UBB Djerassiplatz 1, 1030 Vienna, SR1.7
Thu Jun 6, 13:15-16:30 Uhr, UBB Djerassiplatz 1, 1030 Vienna, SR1.7
Thu Jun 13, 13:15-16:30 Uhr, UBB Djerassiplatz 1, 1030 Vienna, SR1.7
Thu Jun 20, 13:15-16:30 Uhr, UBB Djerassiplatz 1, 1030 Vienna, SR1.7

    
    Thursday
    07.03.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    07.03.
    13:30 - 14:30
    Digital
    (Kickoff Class)
  
    Thursday
    14.03.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    21.03.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    11.04.
    13:15 - 16:30
    PC-Unterrichtsraum 2, Währinger Straße 29 1.OG
    
    Thursday
    11.04.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    18.04.
    13:15 - 16:30
    PC-Unterrichtsraum 2, Währinger Straße 29 1.OG
    
    Thursday
    18.04.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    25.04.
    13:15 - 16:30
    PC-Unterrichtsraum 2, Währinger Straße 29 1.OG
    
    Thursday
    25.04.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    02.05.
    13:15 - 16:30
    PC-Unterrichtsraum 2, Währinger Straße 29 1.OG
    
    Thursday
    02.05.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    16.05.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    23.05.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    N
    Thursday
    06.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    13.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    20.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    27.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1

Information

Aims, contents and method of the course

The students are able to explain typical questions and methods of sequence and structure analysis and can design experiments using these methods.
The students are able to compare sequence and structural data with biological databases.
The students understand basic methods and algorithms of sequence based predictions and predictions of molecular structures. The students are able to apply these to solve typical problems in biology and medicine and can interpret the results.

Assessment and permitted materials

Solution of homework exercises.

Minimum requirements and assessment criteria

Successful submissions of problem solutions in structural bioinformatics, sequence and genome analysis and RNA bioinformatics.

Examination topics

Structural bioinformatics
Sequence and genome analysis
RNA bioinformatics

Reading list

Will be provided during the VU.

Association in the course directory

Module: BIOINF03

Last modified: Tu 20.02.2024 17:25