301236 UE Exercises in Computational Structural Biology (2024S)
DK Integrative Structural Biology
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 08.02.2024 14:00 to Th 22.02.2024 18:00
- Deregistration possible until Th 22.02.2024 18:00
Details
max. 15 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
May 6-17, 1 pm - 5 pm
CRC01&02 (VBC4/6.505 & 6.506) in the main Max Perutz building (Dr.-Bohrgasse 9, 1030 Vienna)
N
Monday
06.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
Tuesday
07.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
Wednesday
08.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
Thursday
09.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
Friday
10.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
Monday
13.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
Tuesday
14.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
Wednesday
15.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
Thursday
16.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
Friday
17.05.
13:00 - 17:00
BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
BZB EDV-Raum CCR02, 6.Ebene 6.506, Dr.-Bohr-Gasse 9, 1030 Wien
Information
Aims, contents and method of the course
Building upon the theoretical lectures in the course Computational Structural Biology (301232-1 VO), the present course will introduce students to the practice of setting up, running and analyzing molecular dynamics simulations of biomolecules using the program suite GROMACS. This practical course complements the theoretical lectures given in 301232-1 VO Computergestuetzte Strukturelle Biologie. Students are required to have completed this or a similar course, or take 301232-1 concurrently.
Assessment and permitted materials
Presentation of the final practical project (50% of the grade); written report from the practicals (50% of the grade).
Minimum requirements and assessment criteria
a. Minimum requirements: at least 50% success; b.Assessment criteria: Performance on the oral exam - 1 (excellent)|90-100%|2 (good): 75-89.99%|3 (satisfactory): 60-74.99%|4 (sufficient): 50-59.99%|5 (insufficient): 0-49.99%
Examination topics
Contents of practical exercises and their theoretical background.
Reading list
Dan Frenkel and Berend Smit: Understanding Molecular Simulation, ISBN ISBN: 9780122673511; Andrew Leach: Molecular Modeling, ISBN-13: 978-0582382107.
Association in the course directory
MMB II., MMEI III, PhD MB 1, PhD MB 2,
Last modified: Tu 16.04.2024 15:46