300191 UE Bioinformatics for non-bioinformaticians - how to build and analyse a transcriptome (2017W)
Labels
An/Abmeldung
- Anmeldung von Do 07.09.2017 08:00 bis Do 21.09.2017 18:00
- Abmeldung bis Di 31.10.2017 18:00
Details
Lehrende
Termine
Die Vorbesprechung findet am 02.10.2017 um 10 Uhr im Raum 1.063 statt. Besprechungszimmer Dep. f. Integrative Zoologie, UZA 1, Biozentrum Althanstraße 14, 1090 Wien.
Blockzeit: 05.02.2018-16.02.2018, täglich von 9.00 bis 13.00 Uhr im Konferenzraum der Zoologie, UZA 1, Biozentrum Althanstraße 14, 1090 Wien
Information
Ziele, Inhalte und Methode der Lehrveranstaltung
Art der Leistungskontrolle und erlaubte Hilfsmittel
1) a multiple choice exam at the end of the first week - 30 % of total grade
2) the submission of a data sheet detailing the results of their transcriptome assembly and analysis 30%
3) a short group presentation comparing the results of the group members - 40%
1) the Linux operating system and the command line
2) Next Generation Sequencing (NGS) data quality control and transcriptome assembly
3) Gene annotation using tools such BLAST, HMMER, signalP, TMHMM etc.
4) Data mining
5) PhylogeneticsStudents will be introduced to the command line and will learn through the practical application of various freely available bioinformatic software packages. In the first week, each student will build their own transcriptome from publicly available data and this will be used in the second week to learn about the basics of gene annotation and phylogeny.Students are required to bring their own laptop however if this is not possible, a loan of a computer can be arranged with the department.