300224 SE Bioinformatics for Microbial Metagenomics (2021W)
Prüfungsimmanente Lehrveranstaltung
Labels
VOR-ORT
An/Abmeldung
Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").
- Anmeldung von Do 09.09.2021 08:00 bis Do 23.09.2021 18:00
- Abmeldung bis So 31.10.2021 18:00
Details
max. 20 Teilnehmer*innen
Sprache: Englisch
Lehrende
Termine (iCal) - nächster Termin ist mit N markiert
Blockveranstaltung
- Donnerstag 04.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 08.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Donnerstag 11.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 15.11. 16:45 - 20:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
- Donnerstag 18.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 22.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Donnerstag 25.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 29.11. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Donnerstag 02.12. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 06.12. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Donnerstag 09.12. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Montag 13.12. 15:00 - 18:15 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
Information
Ziele, Inhalte und Methode der Lehrveranstaltung
This course will focus on bioinformatic approaches in metagenomics for the analysis of mixed microbial communities (microbiomes). The aim of the course is to provide the student with the ability to perform metagenomic analyses and importantly be able to interpret these analyses in the wider biological context. Topics that will be covered include community profiling, genome reconstruction from mixed samples, comparative genomics, exploring the uncharacterised hidden microbial diversity in samples and phylogenetics. The course will offer practical exercises as well as a group project to support the lectures and discussions in class.
Art der Leistungskontrolle und erlaubte Hilfsmittel
Assessment will be based on a group project and overall examination.
Participants must achieve at least 50 pts. by the end of the course.
Grading:
< 50.0: 5
< 62.5: 4
< 75.0: 3
< 87.5: 2
else: 1
Participants must achieve at least 50 pts. by the end of the course.
Grading:
< 50.0: 5
< 62.5: 4
< 75.0: 3
< 87.5: 2
else: 1
Mindestanforderungen und Beurteilungsmaßstab
There are no strict minimum requirements. But students should have experience in Unix/Linux. A basic understanding of Microbiology is recommended and knowledge of microbial genomics would be advantageous, it is therefore a suggestion that students have previously completed course 301060 Practical course on bioinformatics of microbial genomes and metagenomes
Prüfungsstoff
Presentation of group project and examination of content presented in the course.
Literatur
Will be provided during the lecture on the elearning platform.
Zuordnung im Vorlesungsverzeichnis
MMB W-2, MMB W-3, MMEI II-1.2, MMEI II-2.2
Letzte Änderung: Di 24.01.2023 00:26