Universität Wien

300369 UE Genomic approaches to variation, adaptation and speciation (2021S)

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Prüfungsimmanente Lehrveranstaltung
DIGITAL

An/Abmeldung

Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").

Details

max. 12 Teilnehmer*innen
Sprache: Englisch

Lehrende

Termine (iCal) - nächster Termin ist mit N markiert

Freitag 05.03. 13:30 - 14:00 Digital
Dienstag 09.03. 09:00 - 13:30 Digital
Dienstag 16.03. 09:00 - 13:30 Digital
Dienstag 23.03. 09:00 - 13:30 Digital
Dienstag 13.04. 09:00 - 13:30 Digital
Dienstag 20.04. 09:00 - 13:30 Digital
Dienstag 27.04. 09:00 - 13:30 Digital
Dienstag 04.05. 09:00 - 13:30 Digital
Dienstag 11.05. 09:00 - 13:30 Digital
Dienstag 01.06. 09:00 - 13:30 Digital

Information

Ziele, Inhalte und Methode der Lehrveranstaltung

Population genomics and genome evolution from next-generation sequencing data, such as whole-genome sequencing, target capture, RAD sequencing and transcriptomics. We will exemplify genomic investigation procedures to trace natural selection, genetic ancestry, function, structure and gene-environment interactions, starting with introducing basic omic approaches, such as de novo assembly and mapping. Attendance of the complementary lecture VO300127 is recomended.

Art der Leistungskontrolle und erlaubte Hilfsmittel

Active participation in the practical - 2 points; discussion of the results with the group - 6 points; 3 homeworks each with 4 points; thus totaling 20 points.

Mindestanforderungen und Beurteilungsmaßstab

The students are able to understand and apply basic pipelines in genomics (e.g., quality check and filtering of NGS reads; mapping; vcf manipulation; differential expression; SNP calling), and they have good knowledge and skills in the fields of evolutionary and ecological research.

Credit key: <10 points: 5; 10-11.9 points: 4; 12-14.9 points: 3; 15-17.9 points 2; 18-20 points: 1.

Prüfungsstoff

Practical work at the computer; demonstration
Understanding main concepts in evolutionary and ecological genomics
Integration of methods and data in a scientific presentation

Literatur

Literature will be given during the course.

Zuordnung im Vorlesungsverzeichnis

MBO 5, PhD, MES5, MEC-9

Letzte Änderung: Fr 12.05.2023 00:23