300369 UE Genomic approaches to variation, adaptation and speciation (2021S)
Prüfungsimmanente Lehrveranstaltung
Labels
DIGITAL
An/Abmeldung
Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").
- Anmeldung von Do 11.02.2021 08:00 bis Do 25.02.2021 18:00
- Abmeldung bis Mi 31.03.2021 18:00
Details
max. 12 Teilnehmer*innen
Sprache: Englisch
Lehrende
Termine (iCal) - nächster Termin ist mit N markiert
- Freitag 05.03. 13:30 - 14:00 Digital
- Dienstag 09.03. 09:00 - 13:30 Digital
- Dienstag 16.03. 09:00 - 13:30 Digital
- Dienstag 23.03. 09:00 - 13:30 Digital
- Dienstag 13.04. 09:00 - 13:30 Digital
- Dienstag 20.04. 09:00 - 13:30 Digital
- Dienstag 27.04. 09:00 - 13:30 Digital
- Dienstag 04.05. 09:00 - 13:30 Digital
- Dienstag 11.05. 09:00 - 13:30 Digital
- Dienstag 01.06. 09:00 - 13:30 Digital
Information
Ziele, Inhalte und Methode der Lehrveranstaltung
Population genomics and genome evolution from next-generation sequencing data, such as whole-genome sequencing, target capture, RAD sequencing and transcriptomics. We will exemplify genomic investigation procedures to trace natural selection, genetic ancestry, function, structure and gene-environment interactions, starting with introducing basic omic approaches, such as de novo assembly and mapping. Attendance of the complementary lecture VO300127 is recomended.
Art der Leistungskontrolle und erlaubte Hilfsmittel
Active participation in the practical - 2 points; discussion of the results with the group - 6 points; 3 homeworks each with 4 points; thus totaling 20 points.
Mindestanforderungen und Beurteilungsmaßstab
The students are able to understand and apply basic pipelines in genomics (e.g., quality check and filtering of NGS reads; mapping; vcf manipulation; differential expression; SNP calling), and they have good knowledge and skills in the fields of evolutionary and ecological research.Credit key: <10 points: 5; 10-11.9 points: 4; 12-14.9 points: 3; 15-17.9 points 2; 18-20 points: 1.
Prüfungsstoff
Practical work at the computer; demonstration
Understanding main concepts in evolutionary and ecological genomics
Integration of methods and data in a scientific presentation
Understanding main concepts in evolutionary and ecological genomics
Integration of methods and data in a scientific presentation
Literatur
Literature will be given during the course.
Zuordnung im Vorlesungsverzeichnis
MBO 5, PhD, MES5, MEC-9
Letzte Änderung: Fr 12.05.2023 00:23