053521 VU Bioinformatics of sequences and structures (2023S)

6.00 ECTS (4.00 SWS), SPL 5 - Informatik und Wirtschaftsinformatik

Continuous assessment of course work

Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Registration is open from Mo 13.02.2023 09:00 to Th 23.02.2023 09:00
Deregistration possible until Tu 14.03.2023 23:59

Details

max. 25 participants

Language: English

Lecturers

Classes (iCal) - next class is marked with N

First meeting / Vorbesprechung will be online (see Moodle / BBB) on March 1st, 10.00-11.00. Participation at the first meeting is mandatory.
Link to the online meeting: https://moodle.univie.ac.at/mod/bigbluebuttonbn/guestlink.php?gid=G1eQi4pPtXwM

The lecture will be given in three parts (more details in the preliminary meeting/Vorbesprechung):

Structure bioinformatics by Bojan Zagrovic: April 17,18,19 9-17 at Vienna Bio Center (Lecture hall A VBC 5 / EDV room VBC 5)
Sequence bioinformatics I by Ivo Hofacker: May 4/11/25 13.15-18.15 at Währinger Str 29 (SR10 and PC room 4)
Sequence bioinformatics II by Thomas Rattei: June 1/15/22/29 13.15-18.15 at UBB (SR 1.7)

    
    Wednesday
    01.03.
    10:00 - 11:00
    Digital
    (Kickoff Class)
  
    Thursday
    04.05.
    13:15 - 17:00
    Seminarraum 10, Währinger Straße 29 2.OG
    
    Thursday
    11.05.
    13:15 - 17:00
    PC-Unterrichtsraum 4, Währinger Straße 29 1.OG
    
    Thursday
    25.05.
    13:15 - 17:00
    Seminarraum 10, Währinger Straße 29 2.OG
    
    Thursday
    01.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    15.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    22.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1
    
    Thursday
    29.06.
    13:15 - 18:15
    Seminarraum 1.7, Biologie Djerassiplatz 1, 1.010, Ebene 1

Information

Aims, contents and method of the course

The students are able to explain typical questions and methods of sequence and structure analysis and can design experiments using these methods.
The students are able to compare sequence and structural data with biological databases.
The students understand basic methods and algorithms of sequence based predictions and predictions of molecular structures. The students are able to apply these to solve typical problems in biology and medicine and can interpret the results.

Assessment and permitted materials

Solution of homework exercises.

Minimum requirements and assessment criteria

Successful submissions of problem solutions in structural bioinformatics, sequence and genome analysis and RNA bioinformatics.

Examination topics

Structural bioinformatics
Sequence and genome analysis
RNA bioinformatics

Reading list

Will be provided during the VU.

Association in the course directory

Module: BIOINF03

Last modified: Th 11.05.2023 11:27