269020 VO Computational Concepts in Biology II (2014S)

3.00 ECTS (2.00 SWS), SPL 26 - Physik

The lecture will mainly consist of lab visits. These visits will consist of short lectures, seminars, practical exercises, presentations and group discussions (according to the topics to be covered).
The schedule will be arranged with the participating students at the first date of the lecture (Wed Mar 5, 16.00, Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk.). Presence in the first lecture is therefore mandatory for further participation in the lecture.

Moodle

Details

Language: English

Examination dates

Wednesday 11.06.2014 16:00 - 18:00 Christian-Doppler-Hörsaal, Boltzmanngasse 5, 3. Stk., 1090 Wien

Lecturers

Classes (iCal) - next class is marked with N

    
    Wednesday
    05.03.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    19.03.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    26.03.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    02.04.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    09.04.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    30.04.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    07.05.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    14.05.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    21.05.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    28.05.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    04.06.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    18.06.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien
    
    Wednesday
    25.06.
    16:00 - 18:00
    Seminarraum, Zi. 3354A, Boltzmanngasse 5, 3. Stk., 1090 Wien

Information

Aims, contents and method of the course

Functional genomics
- Large-scale experimental methods
- Data management, reduction, normalization
- Methods for differential analysis and clustering
- Enrichment analysis and network-based analysis

Biological networks
- Topological analysis
- Stoichiometric analysis (MFA, FBA)
- Rule-based modeling of combinatorial complex networks
- Differential equation based methods
- Process algebras and model-checking

Organisms and ecosystems
- Genetics and metabolomics
- Systems biology of human diseases
- Dynamical modeling of organism development (including imaging)
- Environmental modeling (ecoenzymatic theories, stochiometry based theories)
- Information processing in biological systems

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Ability to explain the biological problem; ability to abstract the biological problem and to connect it to computational concepts; ability to select appropriate mathematical and computational methods; ability to perform selected computational methods and to interprete their results.

Examination topics

Lectures, seminars, practical exercises, presentations and group discussions.

Reading list

Will be provided during the lecture

Association in the course directory

CO-BIO2

Last modified: Mo 07.09.2020 15:41