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269020 VO Computational Concepts in Biology II (2019S)

3.00 ECTS (2.00 SWS), SPL 26 - Physik
Moodle

Registration/Deregistration

Register/Deregister for this course

Details

Language: English

Examination dates

Wednesday 26.06.2019 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien Friday 12.07.2019 Wednesday 16.10.2019 18:30 - 20:00 Hörsaal 2 UZA 1 Biozentrum 2.249 1.OG Tuesday 28.01.2020 16:45 - 18:15 Josef-Stefan-Hörsaal, Boltzmanngasse 5, 3. Stk., 1090 Wien

Lecturers

Classes (iCal) - next class is marked with N

Wednesday 06.03. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 13.03. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 20.03. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 27.03. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 03.04. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 10.04. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 08.05. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 15.05. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 22.05. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 29.05. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 05.06. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 12.06. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien
Wednesday 19.06. 16:00 - 18:00 Ernst-Mach-Hörsaal, Boltzmanngasse 5, 2. Stk., 1090 Wien

Information

Aims, contents and method of the course

Functional genomics
- Large-scale experimental methods
- Data management, reduction, normalization
- Methods for differential analysis and clustering
- Enrichment analysis and network-based analysis

Biological networks
- Topological analysis
- Stoichiometric analysis (MFA, FBA)
- Rule-based modeling of combinatorial complex networks
- Differential equation based methods
- Process algebras and model-checking

Organisms and ecosystems
- Genetics and metabolomics
- Systems biology of human diseases
- Dynamical modeling of organism development (including imaging)
- Environmental modeling (ecoenzymatic theories, stochiometry based theories)
- Information processing in biological systems

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Ability to explain the biological problem; ability to abstract the biological problem and to connect it to computational concepts; ability to select appropriate mathematical and computational methods; ability to perform selected computational methods and to interprete their results.

Examination topics

Lectures, seminars, practical exercises, presentations and group discussions.

Reading list

Will be provided during the lecture

Association in the course directory

CO-BIO2

Last modified: Tu 15.09.2020 00:23