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269020 VO Computational Concepts in Biology II (2020S)
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
Details
Language: English
Examination dates
Lecturers
- Thomas Rattei
- Andras Aszodi
- Maria Filipa Baltazar de Lima de Sousa
- David Berry
- Christoph Flamm
- Craig Herbold
- Wolfram Weckwerth
- Stefanie Widder
Classes (iCal) - next class is marked with N
11.3. Exact string matching (Thomas Rattei)
18.3. Self learning (No lecture)
25.3. Assembly graphs (Thomas Rattei)
1.4. Self learning (No lecture)
22.4. Self learning (No lecture)
29.4. 13-17 Biological networks I (Stefanie Widder and Christoph Flamm)
6.5. 13-17 Biological networks II (Stefanie Widder and Christoph Flamm)
13.5. Artificial life (Andras Aszodi)
20.5. Microbial Ecology I: PCR and Amplicons (Craig Herbold)
27.5. Microbial Ecology II: Computational concepts (David Berry)
3.6. Comparative Genomics (Filipa Sousa)
10.6. Networks in Biology and Medicine (Jörg Menche)
17.6. Multiomics and System Theory (Wolfram Weckwerth)
24.6. Exam (Rattei)
Wednesday
11.03.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
18.03.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
25.03.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
01.04.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
22.04.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
29.04.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
06.05.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
13.05.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
20.05.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
27.05.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
03.06.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
10.06.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
17.06.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Wednesday
24.06.
16:00 - 18:00
Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
Information
Aims, contents and method of the course
Assessment and permitted materials
Written exam
Minimum requirements and assessment criteria
Ability to explain the biological problem; ability to abstract the biological problem and to connect it to computational concepts; ability to select appropriate mathematical and computational methods; ability to perform selected computational methods and to interprete their results.
Examination topics
Lectures, seminars, practical exercises, presentations and group discussions.
Reading list
Will be provided during the lecture
Association in the course directory
CO-BIO2
Last modified: Tu 06.07.2021 00:23
- Large-scale experimental methods
- Data management, reduction, normalization
- Methods for differential analysis and clustering
- Enrichment analysis and network-based analysisBiological networks
- Topological analysis
- Stoichiometric analysis (MFA, FBA)
- Rule-based modeling of combinatorial complex networks
- Differential equation based methods
- Process algebras and model-checkingOrganisms and ecosystems
- Genetics and metabolomics
- Systems biology of human diseases
- Dynamical modeling of organism development (including imaging)
- Environmental modeling (ecoenzymatic theories, stochiometry based theories)
- Information processing in biological systems