269020 VO Computational Concepts in Biology II (2020S)

3.00 ECTS (2.00 SWS), SPL 26 - Physik

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Details

Language: English

Examination dates

Wednesday 24.06.2020 16:00 - 17:30 Digital Friday 23.10.2020 14:00 - 16:00 Digital

Lecturers

Classes (iCal) - next class is marked with N

11.3. Exact string matching (Thomas Rattei)
18.3. Self learning (No lecture)
25.3. Assembly graphs (Thomas Rattei)
1.4. Self learning (No lecture)
22.4. Self learning (No lecture)
29.4. 13-17 Biological networks I (Stefanie Widder and Christoph Flamm)
6.5. 13-17 Biological networks II (Stefanie Widder and Christoph Flamm)
13.5. Artificial life (Andras Aszodi)
20.5. Microbial Ecology I: PCR and Amplicons (Craig Herbold)
27.5. Microbial Ecology II: Computational concepts (David Berry)
3.6. Comparative Genomics (Filipa Sousa)
10.6. Networks in Biology and Medicine (Jörg Menche)
17.6. Multiomics and System Theory (Wolfram Weckwerth)
24.6. Exam (Rattei)

    
    Wednesday
    11.03.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    18.03.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    25.03.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    01.04.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    22.04.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    29.04.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    06.05.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    13.05.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    20.05.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    27.05.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    03.06.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    10.06.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    17.06.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien
    
    Wednesday
    24.06.
    16:00 - 18:00
    Erwin-Schrödinger-Hörsaal, Boltzmanngasse 5, 5. Stk., 1090 Wien

Information

Aims, contents and method of the course

Functional genomics
- Large-scale experimental methods
- Data management, reduction, normalization
- Methods for differential analysis and clustering
- Enrichment analysis and network-based analysis

Biological networks
- Topological analysis
- Stoichiometric analysis (MFA, FBA)
- Rule-based modeling of combinatorial complex networks
- Differential equation based methods
- Process algebras and model-checking

Organisms and ecosystems
- Genetics and metabolomics
- Systems biology of human diseases
- Dynamical modeling of organism development (including imaging)
- Environmental modeling (ecoenzymatic theories, stochiometry based theories)
- Information processing in biological systems

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Ability to explain the biological problem; ability to abstract the biological problem and to connect it to computational concepts; ability to select appropriate mathematical and computational methods; ability to perform selected computational methods and to interprete their results.

Examination topics

Lectures, seminars, practical exercises, presentations and group discussions.

Reading list

Will be provided during the lecture

Association in the course directory

CO-BIO2

Last modified: Th 28.01.2021 16:09