269020 VO Computational Concepts in Biology II (2021S)

Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

Language: English

Examination dates

Wednesday 30.06.2021 16:00 - 18:00 Digital Monday 13.09.2021 17:00 - 19:00 Digital Tuesday 23.11.2021 15:00 - 16:30 Digital Friday 21.01.2022 14:00 - 16:30 Digital

Lecturers

Classes (iCal) - next class is marked with N

    
    Wednesday
    10.03.
    16:00 - 18:00
    Digital
    
    Wednesday
    17.03.
    16:00 - 18:00
    Digital
    
    Wednesday
    24.03.
    16:00 - 18:00
    Digital
    
    Wednesday
    14.04.
    16:00 - 18:00
    Digital
    
    Wednesday
    21.04.
    16:00 - 18:00
    Digital
    
    Wednesday
    28.04.
    16:00 - 18:00
    Digital
    
    Wednesday
    05.05.
    16:00 - 18:00
    Digital
    
    Wednesday
    12.05.
    16:00 - 18:00
    Digital
    
    Wednesday
    19.05.
    16:00 - 18:00
    Digital
    
    Wednesday
    26.05.
    16:00 - 18:00
    Digital
    
    Wednesday
    02.06.
    16:00 - 18:00
    Digital
    
    Wednesday
    09.06.
    16:00 - 18:00
    Digital
    
    Wednesday
    16.06.
    16:00 - 18:00
    Digital
    
    Wednesday
    23.06.
    16:00 - 18:00
    Digital

Information

Aims, contents and method of the course

Functional genomics
- Large-scale experimental methods
- Data management, reduction, normalization
- Methods for differential analysis and clustering
- Enrichment analysis and network-based analysis

Biological networks
- Topological analysis
- Stoichiometric analysis (MFA, FBA)
- Rule-based modeling of combinatorial complex networks
- Differential equation based methods
- Process algebras and model-checking

Organisms and ecosystems
- Genetics and metabolomics
- Systems biology of human diseases
- Dynamical modeling of organism development (including imaging)
- Environmental modeling (ecoenzymatic theories, stochiometry based theories)
- Information processing in biological systems

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Ability to explain the biological problem; ability to abstract the biological problem and to connect it to computational concepts; ability to select appropriate mathematical and computational methods; ability to perform selected computational methods and to interprete their results.

Examination topics

Lectures, seminars, practical exercises, presentations and group discussions.

Reading list

Will be provided during the lecture

Association in the course directory

CO-BIO2

Last modified: Th 23.03.2023 00:24