Universität Wien

270037 UE Laboratory Course: Computer Graphics and Molecular Modelling (2019W)

4.00 ECTS (4.00 SWS), SPL 27 - Chemie
Continuous assessment of course work

Besuch der VO Computergrafik und Molekulare Modellierung (270073) dringendst empfohlen!

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 10 participants
Language: German

Lecturers

Classes (iCal) - next class is marked with N

geblockt Dez. / Jän.

  • Tuesday 26.11. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 28.11. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 03.12. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 05.12. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 10.12. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 12.12. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 17.12. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 07.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 09.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 14.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 16.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Tuesday 21.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42
  • Thursday 23.01. 14:00 - 17:30 Seminarraum 4 Institut Physikalische Chemie HP Währinger Straße 42

Information

Aims, contents and method of the course

Content:
Introduction to molecular graphics programs using VMD. Comparison of NMR and X-Ray structure of a protein.
Quantifying structural differences (RMSD, Secondary Structure
Assignment, hydrogen bond networks...). Introduction to some
of the advanced functions of VMD. "Nice"
representations of protein structures and movie making. A first introduction
into molecular mechanics calculations (CHARMM). Thereby, a focal point
is the correct set up of the system (adding missing coordinates, protonation
state of side chains in the protein and of the ligand).

Study aids: are handed out during the course (mostly in English, some in German).

Assessment and permitted materials

Grading: Continuous evaluation of participation in the course, combined with the protocol to be handed in at the end of the course.

Minimum requirements and assessment criteria

Students know how to use molecular graphics programs to visualize information about a protein and to
explore differences in related structures. Basic concepts
of molecular mechanics calculations are used to complement structure based techniques.

Examination topics

Practical work at the computer

Reading list

Association in the course directory

TC-3, M205, M206, CHE II-6, CHE II-7

Last modified: Mo 07.09.2020 15:21