270076 UE Structure and Dynamics of Biopolymers A (2008W)
Laboratory Course: Structure and Dynamics of Biopolymers A
Continuous assessment of course work
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Vorbesprechung und Terminvereinbarung: Do, 2.10.2008, 10:00: Institut für Theoretische Chemie und Institut für Computergestützte Biologische Chemie, Währinger Strasse 17, 1090 Wien, Seminarraum (Erdgeschoss)
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Aptitude in using computers for the solution of problems discussed in the lecture
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CHE II-7
Last modified: Fr 31.08.2018 08:55
prediction of biomolecular structures. Emphasis is laid on a
"hands on" approach to problems ranging from elementary principles
"behind" molecular dynamics (MD) simulations to the prediction of the folding
dynamics of RNA molecules on secondary structure level.
1. Introduction to the software packages used for modeling RNA secondary
structure and the 3D structure of biomolecules (Nucleic Acid Builder,
Vienna RNA package).
2. Programming examples concerning the basic principles of MD simulations.
3. Examples concerning the prediction of RNA secondary structure and
folding dynamics.
Course material: Worksheet
Grading: The grade is based on the quality of the solutions to the exercises.
Participants can choose a subset of all offered examples to work on.