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300043 PP Genome analysis of prokaryotes (2018S)
Applied bioinformatics for the analysis of a genome sequence
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Fr 09.02.2018 08:00 to Th 22.02.2018 18:00
- Deregistration possible until Sa 31.03.2018 18:00
Details
max. 15 participants
Language: German, English
Lecturers
Classes
Blockveranstaltung von 3 Wochen: 2.-18. Juli 2018, jeweils 9-17 Uhr, Seminarraum 2D404, UZA2, Althanstr. 14.
Obligatorischer erster Termin (Vorbesprechung) am Die, 5. Juni 2018, 16-17 Uhr, Übungsraum 6, UZA1, Althanstr. 14, 1090
Information
Aims, contents and method of the course
In this practical course the participants acquire the knowledge and expertise to sequence, annotate and analyze prokaryotic genome sequences. This includes Nanopore sequencing, assembly, gene prediction, prediction of protein functions and structures and comparative genome analyses. The sequencing and analysis of yet unsequenced genomes in this practical course allows us to address recent scientific questions in microbiology and microbial ecology using genomic methodologies. Basic knowledge in Bioinformatics and Genomics (as e.g. teached in lecture 300311) are required.
Assessment and permitted materials
Written report in the format of a publication (can be used as bachelor project).
Minimum requirements and assessment criteria
Sequencing of microbial DNA; understanding and application of important computational methods for the analysis of genome sequences; automatic large-scale application of programs using small, self-written scripts; interpretation of the results of computational analyses with regard to the corresponding organism.
Examination topics
Knowledge and skills of computational methods for genome analysis.
Amount and quality of practical work in small work groups.
Amount and quality of practical work in small work groups.
Reading list
Will be provided during the seminar.
Association in the course directory
B-BOE 13, B-BMB 11B, B-BMG 12B, BOE 13
Last modified: Mo 07.09.2020 15:42