300043 PP Script Programming in genome analysis (2019S)
common script languages for the analysis of sequence data
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Fr 08.02.2019 08:00 to Th 21.02.2019 18:00
- Deregistration possible until Su 31.03.2019 18:00
Details
max. 20 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
Preliminary discussion on 2.3.2019 at 10:00 in UR6
- Tuesday 05.03. 10:00 - 11:00 Übungsraum 6
- Tuesday 19.03. 10:00 - 13:00 Übungsraum 6
- Tuesday 26.03. 10:00 - 13:00 Übungsraum 6
- Tuesday 02.04. 10:00 - 13:00 Übungsraum 6
- Tuesday 09.04. 10:00 - 13:00 Übungsraum 6
- Tuesday 30.04. 10:00 - 13:00 Übungsraum 6
- Tuesday 07.05. 10:00 - 13:00 Übungsraum 6
- Tuesday 14.05. 10:00 - 13:00 Übungsraum 6
- Tuesday 21.05. 10:00 - 13:00 Übungsraum 6
- Tuesday 28.05. 10:00 - 13:00 Übungsraum 6
- Tuesday 04.06. 10:00 - 13:00 Übungsraum 6
- Tuesday 18.06. 10:00 - 13:00 Übungsraum 6
- Tuesday 25.06. 10:00 - 13:00 Übungsraum 6
Information
Aims, contents and method of the course
In this practical course, students will learn the most common script languages used in bioinformatics. This will include basic setup of the languages and elementary functions such as data types, assignments, flow control, functions and procedures, debugging. More applied uses like sorting and searching, finding and using existing programming libraries, automating external programmes and web services and parsing results will be used. A notebook is needed (a few can be borrowed in the course)
Assessment and permitted materials
A large programming project to be handed in afterwards
Minimum requirements and assessment criteria
After the course, the students will know principles and techniques for construction of simple programs for solving problems in bioinformatics, using a common scripting programming language. The participants will have practical experience with implementation of text processing and parsing as well as communication with external programs from within a common scripting programming language. The method of work at the course will also train the participants to plan and complete projects.
Examination topics
The course will be in the form of lectures, followed by non-mandatory individual exercises. A larger applied exercise/project is given at the end of the course and is used for grading
Reading list
Association in the course directory
BOE 13
Last modified: Sa 22.10.2022 00:29