300043 PP Script Programming in genome analysis (2021S)
common script languages for the analysis of sequence data
Continuous assessment of course work
Labels
REMOTE
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 11.02.2021 08:00 to Th 25.02.2021 18:00
- Deregistration possible until We 31.03.2021 18:00
Details
max. 20 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
Preliminary discussion on 3.3.2021 at 10:00 via zoom conference
Wednesday
03.03.
10:00 - 13:00
Digital
Wednesday
10.03.
10:00 - 13:00
Digital
Wednesday
17.03.
10:00 - 13:00
Digital
Wednesday
24.03.
10:00 - 13:00
Digital
Wednesday
14.04.
10:00 - 13:00
Digital
Wednesday
21.04.
10:00 - 13:00
Digital
Wednesday
28.04.
10:00 - 13:00
Digital
Wednesday
05.05.
10:00 - 13:00
Digital
Wednesday
12.05.
10:00 - 13:00
Digital
Wednesday
19.05.
10:00 - 13:00
Digital
Wednesday
26.05.
10:00 - 13:00
Digital
Wednesday
02.06.
10:00 - 13:00
Digital
Wednesday
09.06.
10:00 - 13:00
Digital
Wednesday
16.06.
10:00 - 13:00
Digital
Wednesday
23.06.
10:00 - 13:00
Digital
Wednesday
30.06.
10:00 - 13:00
Digital
Information
Aims, contents and method of the course
In this practical course, students will learn the most common script languages used in bioinformatics. This will include basic setup of the languages and elementary functions such as data types, assignments, flow control, functions and procedures, debugging. More applied uses like sorting and searching, finding and using existing programming libraries, automating external programmes and web services and parsing results will be used. A notebook is needed (a few can be borrowed in the course)
Assessment and permitted materials
Weekly exercises that have to be handed in for grading
Minimum requirements and assessment criteria
After the course, the students will know principles and techniques for construction of simple programs for solving problems in bioinformatics, using a common scripting programming language. The participants will have practical experience with implementation of text processing and parsing as well as communication with external programs from within a common scripting programming language. The method of work at the course will also train the participants to plan and complete projects.
Examination topics
The course will be in the form of lectures, followed by mandatory individual exercises.
Reading list
Association in the course directory
BOE 13
Last modified: Fr 12.05.2023 00:23