300048 UE Sequencing bioinformatics for beginners (2025S)
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 06.02.2025 14:00 to Th 20.02.2025 18:00
- Deregistration possible until Sa 15.03.2025 18:00
Details
max. 20 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
- Thursday 06.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 13.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 20.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 27.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 03.04. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 10.04. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- N Thursday 08.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 15.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 22.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 05.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 12.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 26.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
Information
Aims, contents and method of the course
Assessment and permitted materials
Active contribution. Solving of 4 challenges during the course (with guidance).
Minimum requirements and assessment criteria
Submission of possible solutions for 4 challenges through Moodle. First, the basic understanding of the approach is evaluated, then the correctness of the solution. Each challenge represents 25% of the mark.
Examination topics
Application of bash commands introduced in the course; application of mapping, genotyping & filtering tools.
Reading list
Association in the course directory
BAN 5
Last modified: Mo 24.02.2025 10:47
How to use the command line? How to work with bash and integrated tools, and using R for analysis and visualization? How to work with big data files, in particular from DNA sequencing? Which file types are used in this context? How to use reference genomes, how to map and filter sequencing data? How to get genotypes, and how to process these?