Universität Wien

300072 UE Applications of admixture genomics (2022W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 10 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

  • Thursday 12.01. 09:45 - 10:15 Seminarraum 1.1 PC, Biologie Djerassiplatz 1, 1.003, Ebene 1 (Kickoff Class)
  • Thursday 19.01. 09:45 - 13:45 Seminarraum 1.1 PC, Biologie Djerassiplatz 1, 1.003, Ebene 1
  • Thursday 26.01. 09:45 - 13:45 Seminarraum 1.1 PC, Biologie Djerassiplatz 1, 1.003, Ebene 1
  • Thursday 02.02. 09:45 - 13:45 Seminarraum 1.1 PC, Biologie Djerassiplatz 1, 1.003, Ebene 1
  • Thursday 09.02. 09:45 - 13:45 Seminarraum 1.1 PC, Biologie Djerassiplatz 1, 1.003, Ebene 1

Information

Aims, contents and method of the course

Practical course on admixture genomics. We will use public data from modern and ancient genomes, filter and analyze this data using common tools, and find admixed fragments. This will involve the command line interface, bash scripting, visualization in R, application of command line tools.
The goal will be an understanding of work flows to detect admixture in genomic data.
All participants will work in an interactive session, either on their own laptop or a PC in the lecture room.
No previous knowledge in programming required.

Assessment and permitted materials

During session 3 and 5, an analysis task will be assigned to students, closely related to the content of the previous sessions.

Minimum requirements and assessment criteria

Completion of the analysis task will be evaluated.
Presence during the sessions is required.

Examination topics

Reading list

Association in the course directory

MAN W5, MAN 3

Last modified: Mo 23.01.2023 14:09