Universität Wien FIND

300185 VO Structural Bioinformatics I (2016W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie

Registration/Deregistration

Details

Language: English

Examination dates

Lecturers

Classes

Preliminary meeting in the Seminar room (VBC 5):
Friday 14. Oct.2016, 12.00 - 13.00 Uhr
Lectures in the PC-room (VBC 5), Viennabiocenter 5, 1030 Wien.
Schedule:
MON 16 January 2017, from 10 to 12 and from 13 to 17
TUE 17 January 2017, from 10 to 12 and from 13 to 17
WEN 18 January 2017, from 10 to 12 and from 13 to 17
THU 19 January 2017, from 10 to 12 and from 13 to 17
FRI 20 January 2017, from 10 to 12 and from 13 to 17

---------------------------
Exams (in my bureau of the Department of Structural and Computational Biology)

FRI 24 March 2017, at 9.30
FRI 15 April 2017, at 9.30
FRI 19 May 2017, at 9.30
FRI 16 June 2017, at 9.30

---------------------------
Note: a MAXIMUM of 15 students can be accepted.

Included in the teaching program of the PhD program "Integrative Structural Biology", part of the Vienna Doctoral School.


Information

Aims, contents and method of the course

Programme Introduction to the molecular graphics and analysis of the most common protein folds with RasMol, Pymol and Chimera. Measurements of structural similarity between proteins, theory and applications (Dalilite, CE, PDBeFold and other tools). Databases of macromolecular structures: the Protein Data Bank, the wwPDB and the ePDB. Databases of structural domains: CATH, SCOP, and SCOP2. Databases of protein domains: Pfam, InterPro, InterProScan. Databases of computational models: ModBase and BioModels. Validation of experimental macromolecular structures. The problem of data redundancy.

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Examination topics

Reading list


Association in the course directory

MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB, PhD MB 1,UF MA BU 01, UF MA BU 04

Last modified: Th 05.09.2019 12:58