300362 UE Applied Data Analysis (2019S)

10.00 ECTS (6.00 SWS), SPL 30 - Biologie

Continuous assessment of course work

Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Registration is open from Fr 08.02.2019 08:00 to Th 21.02.2019 18:00
Deregistration possible until Su 31.03.2019 18:00

Details

max. 15 participants

Language: English

Lecturers

Robert Paul Zimmermann

Classes (iCal) - next class is marked with N

Verpflichtende Vorbesprechung/ Compulsory preliminary meeting am 10.04.2019 um 12 Uhr im COSB Seminarraum, Biozentrum Althanstraße 14, 1090 Wien
The course is planned for 10 days total over the course of 3 weeks of half-day lecturing and supervised project work/discussion beginning sometime soon after Easter, depending on the time requirements of the majority of participants.

    
    Wednesday
    10.04.
    12:00 - 13:00
    COSB-Seminarraum
    
    Monday
    29.04.
    10:00 - 18:00
    COSB-Seminarraum
    
    Tuesday
    30.04.
    10:00 - 18:00
    Übungsraum 2
    
    Thursday
    02.05.
    10:00 - 18:00
    Übungsraum 2
    
    Friday
    03.05.
    10:30 - 18:30
    Konferenzraum
    
    Monday
    06.05.
    10:00 - 18:00
    COSB-Seminarraum
    
    Tuesday
    07.05.
    10:00 - 18:00
    Übungsraum 3
    
    Friday
    10.05.
    10:30 - 18:30
    Konferenzraum
    
    Monday
    13.05.
    09:00 - 16:00
    Konferenzraum
    
    Friday
    17.05.
    10:30 - 18:30
    Konferenzraum
    
    Monday
    20.05.
    09:00 - 16:00
    Konferenzraum

Information

Aims, contents and method of the course

In this course we will learn about modern high-throughput methodologies and get hands-on experience with new methods and real data. We will discuss sequencing technology, experiment design, quality control, read mapping and counting, differential expression analysis, expression profiles and principal components analysis.

Assessment and permitted materials

Exercises will be done throughout the course as a part of a collective analysis.

Minimum requirements and assessment criteria

Students are recommended but not required to take 300353 UE Applied programming for Bioinformatics, or have a basic grounding in Unix and BASH shell scripting.

Examination topics

A final report describing the methods used as well as an analysis of the data will be required after completion of the course. Attendance and participation are also graded.

Reading list

Association in the course directory

MES6, MMEI III, MGE III-2, MMB W-2, MMB W-3, M-WZB

Last modified: Sa 22.10.2022 00:30