Universität Wien FIND

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300362 UE Applied Data Analysis (2020S)

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
Moodle

Registration/Deregistration

Details

max. 15 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

Vorbesprechung/Preliminary meeting:
25.03.2020 um/at 13:30 Uhr im/in COSB Seminarraum
(Biozentrum Althanstraße 14, 1090 Wien)
The course is planned for 10 days total over the course of 4 weeks of half-day lecturing and supervised project work/discussion beginning around April 20th till mid May.

Wednesday 25.03. 13:30 - 14:30 COSB Seminarraum, UZA 1, Biozentrum Althanstraße 14, 2.022 2.OG
Monday 20.04. 09:00 - 17:00 COSB Seminarraum, UZA 1, Biozentrum Althanstraße 14, 2.022 2.OG
Tuesday 21.04. 09:00 - 12:00 Konferenzraum der Zoologie, UZA 1,Biozentrum Althanstraße 14, 1.015 EG
Tuesday 21.04. 12:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Monday 27.04. 09:00 - 17:00 COSB Seminarraum, UZA 1, Biozentrum Althanstraße 14, 2.022 2.OG
Tuesday 28.04. 09:00 - 12:00 Konferenzraum der Zoologie, UZA 1,Biozentrum Althanstraße 14, 1.015 EG
Tuesday 28.04. 12:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Thursday 30.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Monday 04.05. 09:00 - 17:00 COSB Seminarraum, UZA 1, Biozentrum Althanstraße 14, 2.022 2.OG
Thursday 07.05. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Monday 11.05. 09:00 - 17:00 COSB Seminarraum, UZA 1, Biozentrum Althanstraße 14, 2.022 2.OG
Tuesday 12.05. 09:00 - 12:00 Konferenzraum der Zoologie, UZA 1,Biozentrum Althanstraße 14, 1.015 EG
Tuesday 12.05. 12:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Thursday 14.05. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG

Information

Aims, contents and method of the course

In this course we will learn about modern high-throughput methodologies and get hands-on experience with new methods and real data. We will discuss sequencing technology, experiment design, quality control, read mapping and counting, differential expression analysis, expression profiles and principal components analysis.

Assessment and permitted materials

Exercises will be done throughout the course as a part of a collective analysis.

Minimum requirements and assessment criteria

Students are recommended but not required to take 300353 UE Applied programming for Bioinformatics, or have a basic grounding in Unix and BASH shell scripting.
There are 10 days of the course. Presence on at least 8 days is required. The grade will be based on course participation (20%) and the final report in a form of a scientific paper outlining the aims and analyses completed during the course, as well as potential future directions (80%).

Examination topics

A final report describing the methods used as well as an analysis of the data will be required after completion of the course. Attendance and participation are also graded.

Reading list

Association in the course directory

MES6, MMEI III, MGE III-2, MMB W-2, MMB W-3, M-WZB

Last modified: Mo 21.09.2020 15:10