Universität Wien FIND

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Warning! The directory is not yet complete and will be amended until the beginning of the term.

300362 UE Applied Data Analysis (2021S)

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
ON-SITE

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 15 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

Dear students,
Due to the uncertainty of the teaching situation in the summer semester we will have (likely) an online get-together on Wednesday March 17th at 3pm. We will then confirm 10 days, likely in April after Easter) of the course to take place either online (like last year) or, hopefully and more fun, in-person!

Tuesday 13.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Wednesday 14.04. 09:00 - 12:00 Übungsraum 3, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.012 1.OG
Wednesday 14.04. 12:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Thursday 15.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Friday 16.04. 09:00 - 13:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Friday 16.04. 13:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Tuesday 20.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Wednesday 21.04. 09:00 - 12:00 Übungsraum 3, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.012 1.OG
Wednesday 21.04. 12:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Thursday 22.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Friday 23.04. 09:00 - 13:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Friday 23.04. 13:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Tuesday 27.04. 09:00 - 17:00 Übungsraum 2, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.010 1.OG
Wednesday 28.04. 12:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Thursday 29.04. 09:00 - 17:00 Übungsraum 3, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.012 1.OG
Friday 30.04. 09:00 - 12:00 Übungsraum 3, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.012 1.OG
Friday 30.04. 13:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG
Tuesday 04.05. 09:00 - 12:00 Übungsraum 3, UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.012 1.OG
Tuesday 04.05. 13:00 - 17:00 Übungsraum 4 UZA 1, Biozentrum Althanstraße 14, Morphologie Z2.016 1.OG

Information

Aims, contents and method of the course

In this course we will learn about modern high-throughput methodologies and get hands-on experience with new methods and real data. We will discuss sequencing technology, experiment design, quality control, assembly, read mapping and counting, differential expression analysis, expression profiles and principal components analysis.

Assessment and permitted materials

Exercises will be done throughout the course as a part of a collective analysis.

Minimum requirements and assessment criteria

There are 10 days of the course. Presence on at least 8 days is required. The grade will be based on course participation (20%) and the final report in a form of a scientific paper outlining the aims and analyses completed during the course, as well as potential future directions (80%).
Students are recommended but not required to take 300353 UE Applied programming for Bioinformatics, or have a basic grounding in Unix and BASH shell scripting.

Examination topics

A final report describing the methods used as well as an analysis of the data will be required after completion of the course. Attendance and participation are also graded.

Reading list


Association in the course directory

MES6, MMEI III, MGE III-2, MMB W-2, MMB W-3, M-WZB

Last modified: We 05.05.2021 10:29