Universität Wien

300369 UE Genomic approaches to variation, adaptation and speciation (2023S)

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
ON-SITE
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 12 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

  • Thursday 02.03. 13:30 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 07.03. 09:00 - 13:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 14.03. 09:00 - 13:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 21.03. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 18.04. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 25.04. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 02.05. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 09.05. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 30.05. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
  • Tuesday 06.06. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG

Information

Aims, contents and method of the course

Population genomics and genome evolution from next-generation sequencing data, such as whole-genome sequencing, target capture, RAD sequencing and transcriptomics. We will exemplify genomic investigation procedures to trace natural selection, genetic ancestry, function, structure and gene-environment interactions, starting with introducing basic omic approaches, such as de novo assembly and mapping. Attendance of the complementary lecture VO300127 (WS) is recomended. Students that have taken this lecture and have also passed the exam will be given priority for this complementary practical.

Assessment and permitted materials

Active participation in the practical - 5 points; 3 short tests each with 5 points; thus totaling 20 points.

Minimum requirements and assessment criteria

The students are able to understand and apply basic pipelines in genomics (e.g., quality check and filtering of NGS reads; mapping; vcf manipulation; differential expression; SNP calling), and they have good knowledge and skills in the fields of evolutionary and ecological research.

Credit key: <10 points: 5; 10-11.9 points: 4; 12-14.9 points: 3; 15-17.9 points 2; 18-20 points: 1.

Examination topics

Practical work at the computer; demonstration
Understanding main concepts, methods and data types in evolutionary and ecological genomics

Reading list

Handouts and literature will be given during the course.

Association in the course directory

MBO 5, PhD, MES5, MEC-9, MZO W-5

Last modified: We 03.05.2023 08:28