Universität Wien

300369 UE Genomic approaches to variation, adaptation and speciation (2024S)

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
ON-SITE
Moodle
Th 06.06. 09:00-14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 12 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

Thursday 07.03. 12:30 - 13:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 18.04. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 25.04. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 02.05. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 16.05. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 13.06. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 20.06. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Thursday 27.06. 09:00 - 14:00 Übungsraum 3 (Fakultätszentrum für Biodiversität) Rennweg 1.OG

Information

Aims, contents and method of the course

We will exemplify genomic investigation procedures of population genomics and genome evolution to trace natural selection, genetic ancestry, function, structure and gene-environment interactions, starting with introducing basic omics approaches, such as de novo assembly and variant calling. Attendance of the complementary lecture VO300127 (WS) is highly recommended. Students that have taken this lecture and have also passed the exam will be given priority for this complementary practical.

Assessment and permitted materials

Active participation in the practical - 5 points; 3 short tests each with 5 points; thus totaling 20 points.

Minimum requirements and assessment criteria

The students are able to understand and apply basic pipelines in genomics (e.g., quality check and filtering of NGS reads; mapping; vcf manipulation; differential expression; SNP calling), and they have good knowledge and skills in the fields of evolutionary and ecological research.

Credit key: <10 points: 5; 10-11.9 points: 4; 12-14.9 points: 3; 15-17.9 points 2; 18-20 points: 1.

Examination topics

Practical work at the computer; demonstration
Understanding main concepts, methods and data types in evolutionary and ecological genomics

Reading list

Handouts and literature will be given during the course.

Association in the course directory

MBO 5, MES5, MEC-9

Last modified: Tu 12.03.2024 07:06