Universität Wien FIND

300561 UE Molecular Phylogenetics - from the root to the tips of the animal tree (2019W)

Methods and concepts of molecular phylogenetics: from DNA to interpreted phylogenies

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Continuous assessment of course work

Registration/Deregistration

Details

max. 10 participants
Language: German, English

Lecturers

Classes (iCal) - next class is marked with N

Vorbesprechung am 07.10.2019 um 11 Uhr im SR 1, UZA 1, Biozentrum Althanstraße 14, 1090 Wien

LV findet vom 04.11.2019 - 22.11.2019 von 09.00-16.00 Uhr täglich statt. Teilweise im SR 1 und teilweis im Labor. Wird bei der Vorbesprechung bekannt gegeben.

Eigener Laptop (Windows) ist unbedingt anzuraten.

Monday 07.10. 11:00 - 12:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG
Monday 04.11. 09:00 - 12:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG
Tuesday 05.11. 09:00 - 12:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG
Monday 11.11. 09:00 - 16:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG
Tuesday 12.11. 09:00 - 16:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG
Wednesday 13.11. 09:00 - 16:00 Seminarraum 1, UZA 1, Biozentrum Althanstraße 14 1.025 EG

Information

Aims, contents and method of the course

Students get hands-on experience in the workflow of DNA-based phylogenetic inference, starting with DNA extraction from animal tissue, on to PCR, sequencing, computer-based alignment and tree reconstruction, and the critical interpretation of the results. The lecture part covers the most important theoretical principles of molecular phylogenetics. Students apply their knowledge to mini-projects. The results are delivered in short oral presentations and written reports in the style of scientific publications.

Assessment and permitted materials

Performance is evaluated by the student´s committment during the course and the quality of the oral and written presentations.

Minimum requirements and assessment criteria

Students are familiar with molecular lab procedures, DNA extraction, PCR, cloning of PCR-products, and DNA sequencing. They have basic practical experience in using DNA databases, sequence alignment, and various methods of tree inference. Participants are able to appropriately present their results and to critically evaluate publications in this field.

Examination topics

Introductory lectures, coaching the workflow in the molecular lab, introduction to and usage of various software for sequence analysis (alignment, tree inference, graphical presentation of results), scientific writing and publication.

Reading list


Association in the course directory

BZO 12, MZO 2, MES5

Last modified: Mo 04.11.2019 18:28