300590 VO Fundamental Bioinformatics (2012W)

5.00 ECTS (3.00 SWS), SPL 30 - Biologie

Termin: jew. Mittwoch von 09.00 -11.30 Uhr
Ort: Hörsaal Inst.f.Biomolekulare Strukturchemie, Campus Vienna Biocenter 5
Beginn: 3.10.2012
Siehe auch Studentenseite der Departments:
http://molekularebiologie.univie.ac.at/

Moodle

Details

Language: German

Examination dates

Wednesday 06.02.2013 Wednesday 13.03.2013 Friday 26.04.2013 Wednesday 29.05.2013 Tuesday 27.08.2013

Lecturers

Ivo Hofacker

Classes (iCal) - next class is marked with N

    
    Wednesday
    03.10.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    10.10.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    17.10.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    24.10.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    31.10.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    07.11.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    14.11.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    21.11.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    28.11.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    05.12.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    12.12.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    09.01.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    16.01.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    23.01.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien
    
    Wednesday
    30.01.
    09:00 - 11:30
    STB/Hörsaal A  Campus Vienna Biocenter 5, 1030 Wien
STB/Hörsaal B  Campus Vienna Biocenter 5, 1030 Wien

Information

Aims, contents and method of the course

Introduction to basic bioinformatical algorithms, in particular sequence
analysis methods.
sequence similarity; dynamic programming; alignment algorithms
(Needleman-Wunsch, Smith-Waterman, Gotoh, BLAST and FASTA);
multiple alignments; clustering and phylogeny reconstruction; RNA secondary
structures.
Course material: Lecture notes
Grading: Written exam

Assessment and permitted materials

Minimum requirements and assessment criteria

Understanding basic algorithms for sequence analysis as well as selected
advanced algorithms.

Examination topics

Reading list

Association in the course directory

B-BMB 9, B-BMG 9, BMB 10, BMG 9, B-BAN 9, B-BOE 11, B-BPB 12, B-BPF 8, B-BZO 11

Last modified: Mo 07.09.2020 15:44