301060 UE Practical course on bioinformatics of microbial genomes and metagenomes (2019W)
Continuous assessment of course work
Labels
Moodle; Tu 22.10. 14:30-17:00 Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Registration/Deregistration
- Registration is open from Th 05.09.2019 08:00 to Th 19.09.2019 18:00
- Deregistration possible until Th 19.09.2019 18:00
Details
max. 30 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
Tuesday
01.10.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
08.10.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
15.10.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
N
Tuesday
22.10.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
29.10.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
05.11.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
12.11.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
19.11.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
26.11.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
03.12.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
10.12.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
17.12.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
07.01.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
14.01.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
21.01.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Tuesday
28.01.
14:30 - 17:00
Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A
Information
Aims, contents and method of the course
This practical seminar introduces the major computational methods necessary to process, analyse and interpret shotgun metagenomic sequences in theory and practice. Main topics are metagenome assembly, binning, taxonomic characterization, and annotation. Students simulate individual metagenomes first, and test the relevant computational approaches on them. Based on this experience, real metagenomes from recent research projects are analyzed in the second part of the seminar.
Assessment and permitted materials
Paper presentation; oral progress reports; written work report.
Minimum requirements and assessment criteria
Basic knowledge in Bioinformatics and Genomics (as e.g. teached in lecture 300311) are required for participation in this seminar.
Examination topics
This practical seminar will consist of theoretical (lecture like) introductions to the topics, discussion of selected scientific papers and practical exercises in the computer room.
Reading list
Will be provided during the seminar.
Association in the course directory
MMB W-2, MMB W-3, MMEI II-1.2, MMEI II-2.2, WZB
Last modified: We 02.10.2019 17:29