301185 VO Structural Bioinformatics I (2017W)
Labels
Details
Language: English
Examination dates
- Monday 05.02.2018
- Monday 12.02.2018
- Monday 05.03.2018
- Friday 13.04.2018
- Friday 11.05.2018
- Friday 21.09.2018
- Friday 16.11.2018
Lecturers
Classes
Preliminary meeting in the Seminar room (Dept. Structural and Computational Biology)
Friday, October 6, 2017, 12-13-------------------------------------------------------------------------------------------------------------------Lectures in the PC room (Dept. Structural and Computational Biology)Monday, January 15, 2018, 10-12 and 13-17
Tuesday, January 16, 2018, 10-12 and 13-17
Wednesday, January 17, 2018, 10-12 and 13-17
Thursday, January 18. 2018, 10-12
Friday, January 19, 2018, 10-12 and 13-17-------------------------------------------------------------------------------------------------------------------
Exams in Carugo’s office (Dept. Structural and Computational Biology)Friday, February 2, 2018, 9.30
Friday, February 9, 2018, 9.30
Friday, March 2, 2018, 9.30
Friday, March 23, 2018, 9.30
Friday, April 13, 2018, 9.30
Friday, May 11, 2018, 9.30
Information
Aims, contents and method of the course
Programme Introduction to the molecular graphics and analysis of the most common protein folds with RasMol, Pymol and Chimera. Measurements of structural similarity between proteins, theory and applications (Dalilite, CE, PDBeFold and other tools). Databases of macromolecular structures: the Protein Data Bank, the wwPDB and the ePDB. Databases of structural domains: CATH, SCOP, and SCOP2. Databases of protein domains: Pfam, InterPro, InterProScan. Databases of computational models: ModBase and BioModels. Validation of experimental macromolecular structures. The problem of data redundancy.
Assessment and permitted materials
Written exam
Minimum requirements and assessment criteria
Examination topics
Reading list
Association in the course directory
MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB, PhD MB 1,UF MA BU 01, UF MA BU 04
Last modified: Mo 07.09.2020 15:44