301214 UE Toolkit for in silico sequence analysis (2018W)
vormals UE IIIB
Continuous assessment of course work
Labels
Summary
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 06.09.2018 08:00 to Th 20.09.2018 18:00
- Deregistration possible until We 31.10.2018 18:00
Registration information is available for each group.
Groups
Group 1
max. 18 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
Verpflichtende Vorbesprechung: 1.10.2018, 12.00 Uhr
SR 1/BZB, Dr. Bohrgasse 9, 1030 Wien
Termin: 5.- 9.11.2018, 9.00 - 17.00 Uhr
Ort: BZB, EDV-Kursraum, Dr. Bohrgasse, 1030 Wien
http://molekularebiologie.univie.ac.at/
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Monday
01.10.
12:00 - 13:00
BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien (Kickoff Class) - Monday 05.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Tuesday 06.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Wednesday 07.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Thursday 08.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Friday 09.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Aims, contents and method of the course
Assessment and permitted materials
Evaluation mode:
• Active participation (25%)
• Written report (25%)
• Exam (50%): Oral or written at the course end. Complex task including sequence assembly, gene finding and retrieval, sequence homology search, DNA translation, pairwise sequence alignment, multiple sequence alignment, mutation identification at DNA and protein level, protein domain analysis, cloning
• Active participation (25%)
• Written report (25%)
• Exam (50%): Oral or written at the course end. Complex task including sequence assembly, gene finding and retrieval, sequence homology search, DNA translation, pairwise sequence alignment, multiple sequence alignment, mutation identification at DNA and protein level, protein domain analysis, cloning
Group 2
max. 18 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
Verpflichtende Vorbesprechung: 1.10.2018,12.00 Uhr
SR 1/BZB, Dr. Bohrgasse 9, 1030 Wien
Termin: 19.- 23.11.2018, 9.00 - 17.00 Uhr
Ort: BZB, EDV-Kursraum, Dr. Bohrgasse, 1030 Wien
- Monday 01.10. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
- Monday 19.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Tuesday 20.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Wednesday 21.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Thursday 22.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Friday 23.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Aims, contents and method of the course
This practical course teaches basic computing in molecular biosciences: search, retrieval and analysis of DNA and protein sequences, primer design, mutationanalysis and cloning, working with publicationdatabases, citations, graphical representation of Data and statistical analysis with the help of local as well as internet-based resources.Exam: oral in small groups.Requirements: basic computer knowledge and Course III A: Laboratory Work in Molecular Biology
Assessment and permitted materials
Compulsory attendance; the evaluation consists of different performances: active participation and results obtained, written report, theoretical knowledge including final exam (the percentage of the subgrades will be announced by the course leader); each of the subgrades must have a positive evaluation.
Group 3
max. 18 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
Verpflichtende Vorbesprechung : 1.10.2018; 12:00 Uhr
SR 1/BZB, Dr. Bohrgasse 9, 1030 Wien
Termin: 26.11.- 30.11..2018, 9.00 - 17.00 Uhr
Ort: BZB, EDV-Kursraum, Dr. Bohrgasse, 1030 Wien
- Monday 01.10. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
- Monday 26.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Tuesday 27.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Wednesday 28.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Thursday 29.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Friday 30.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Aims, contents and method of the course
This practical course teaches basic computing in molecular biosciences: search, retrieval and analysis of DNA and protein sequences with the help of local as well as internet-based resources. Prüfung: schriftlich am Ende der Übung
Requirements: basic computer knowledge and Course III A: Laboratory Work in Molecular Biology
Requirements: basic computer knowledge and Course III A: Laboratory Work in Molecular Biology
Assessment and permitted materials
Compulsory attendance; the evaluation consists of different performances: active participation and results obtained, written report, theoretical knowledge including final exam (the percentage of the subgrades will be announced by the course leader); each of the subgrades must have a positive evaluation.
Information
Minimum requirements and assessment criteria
Examination topics
Reading list
Association in the course directory
MMB I-2, MMB II-2, MMB III-2, MMB W-2, MGE III-1, MGE III-2, MMEI III, WZB
Last modified: Th 13.07.2023 00:23
• design of CRIPSR/Cas9-mediated genome editing
• in silico plasmid cloning
• design and analysis of quantitative PCR experiments
• search and analysis of DNA and protein sequences (NCBI, EBI, GENEBANK, ENSEMBL, UNIPROT)
• homology analysis and sequence comparison (BLAST, FASTA, EMBOSS)
• identification of protein domains (multiple sequence alignment, PROSITE)
• gene finding algorithms (EMBOSS)
• 3D protein structure (PDB, PDB viewers)
• navigation in literature databases (PUBMED)Requirements: basic computer knowledge and Course III A: Laboratory Work in Molecular Biology