Universität Wien FIND

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301214 UE Toolkit for in silico sequence analysis (2020S)

forma UE IIIB

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work

Summary

1 Kovarik , Moodle
2 Eislmayr , Moodle
3 Sneezum , Moodle

Registration/Deregistration

Registration information is available for each group.

Groups

Group 1

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

Tuesday 03.03. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
(Kickoff Class)
Monday 30.03. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Tuesday 31.03. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Wednesday 01.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Thursday 02.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Friday 03.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Group 2

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

Tuesday 03.03. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien (Kickoff Class)
Monday 20.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Tuesday 21.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Wednesday 22.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Thursday 23.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Friday 24.04. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Group 3

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes

see german version


Information

Aims, contents and method of the course

Aims: Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content: Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods: Practical work on computer

Assessment and permitted materials

Type of assessment, the following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.
Permittet material: own notes, own protocol, computer, internet

Minimum requirements and assessment criteria

Minimum requirements for passing the course: Attendance, submission of the protocol, final exam (each of the evaluated parts must be completed with a positive grade).
Assessment criteria: active participation 25%, protocol 25%, final exam 50%

Examination topics

Contents of course units.

Reading list

Descriptions and references to original publications on the web pages of the databases and web-based services.

Association in the course directory

MMB I-2, MMB II-2, MMB III-2, MMB W-2, MGE III-1, MGE III-2, MMEI III, WZB

Last modified: Mo 07.09.2020 15:22