Universität Wien

301214 UE Toolkit for in silico sequence analysis (2020S)

forma UE IIIB

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work

Summary

1 Kovarik , Moodle
2 Eislmayr , Moodle
3 Sneezum , Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
Registration information is available for each group.

Groups

Group 1

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

  • Tuesday 03.03. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
    BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien     (Kickoff Class)
  • Monday 30.03. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Tuesday 31.03. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Wednesday 01.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Thursday 02.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Friday 03.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Group 2

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

  • Tuesday 03.03. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien (Kickoff Class)
  • Monday 20.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Tuesday 21.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Wednesday 22.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Thursday 23.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
  • Friday 24.04. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Group 3

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes

see german version

Information

Aims, contents and method of the course

Aims: Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content: Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods: Practical work on computer

Assessment and permitted materials

Type of assessment, the following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.
Permittet material: own notes, own protocol, computer, internet

Minimum requirements and assessment criteria

Minimum requirements for passing the course: Attendance, submission of the protocol, final exam (each of the evaluated parts must be completed with a positive grade).
Assessment criteria: active participation 25%, protocol 25%, final exam 50%

Examination topics

Contents of course units.

Reading list

Descriptions and references to original publications on the web pages of the databases and web-based services.

Association in the course directory

MMB I-2, MMB II-2, MMB III-2, MMB W-2, MGE III-1, MGE III-2, MMEI III, WZB

Last modified: Th 13.07.2023 00:23