301214 UE Toolkit for in silico sequence analysis (2020W)
vormals UE IIIB
Continuous assessment of course work
Labels
Summary
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 10.09.2020 08:00 to Th 24.09.2020 18:00
- Deregistration possible until Sa 31.10.2020 18:00
Registration information is available for each group.
Groups
Group 1
max. 18 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
see german version
- Monday 05.10. 12:00 - 13:00 Digital (Kickoff Class)
- Monday 02.11. 09:00 - 17:00 Digital
- Tuesday 03.11. 09:00 - 17:00 Digital
- Wednesday 04.11. 09:00 - 17:00 Digital
- Thursday 05.11. 09:00 - 17:00 Digital
- Friday 06.11. 09:00 - 17:00 Digital
Aims, contents and method of the course
Assessment and permitted materials
The following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.
Examination topics
Contents of course
Group 2
max. 9 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
see german version
- Monday 05.10. 12:00 - 13:00 Digital (Kickoff Class)
- Monday 09.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Tuesday 10.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Wednesday 11.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Thursday 12.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
- Friday 13.11. 09:00 - 17:00 BZB/Seminarraum 3, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Aims, contents and method of the course
Aims:
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer
Assessment and permitted materials
Aktive Teilnahme und Lösung von Aufgaben Versuche, schriftliches Protokoll und Abschlussprüfung.
Examination topics
Contents of the course
Group 3
max. 18 participants
Language: English
LMS: Moodle
Lecturers
Classes (iCal) - next class is marked with N
see german version
- Monday 05.10. 12:00 - 13:00 Digital (Kickoff Class)
- Monday 16.11. 09:00 - 17:00 Digital
- Tuesday 17.11. 09:00 - 17:00 Digital
- Wednesday 18.11. 09:00 - 17:00 Digital
- Thursday 19.11. 09:00 - 17:00 Digital
- Friday 20.11. 09:00 - 17:00 Digital
Aims, contents and method of the course
Aims:
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer
Assessment and permitted materials
The following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.
Examination topics
Contents of the course
Information
Minimum requirements and assessment criteria
Evaluation of active participation, protocol and final exam
Key for the final grade: active participation 25%, protocol 25%, final exam 50%
Each of the evaluated parts must be completed with a positive grade.
Key for the final grade: active participation 25%, protocol 25%, final exam 50%
Each of the evaluated parts must be completed with a positive grade.
Reading list
Course program and documentation in Moodle. Original publications on the web pages of the databases and web-based services.
Association in the course directory
MMB I-2, MMB II-2, MMB III-2, MMB W-2, MGE III-1, MGE III-2, MMEI III
Last modified: Th 13.07.2023 00:23
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods: Practical work on computer