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301214 UE Toolkit for in silico sequence analysis (2021W)

vormals UE IIIB

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
ON-SITE

Summary

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
Registration information is available for each group.

Groups

Group 1

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

Thursday 07.10. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien (Kickoff Class)
Monday 08.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Tuesday 09.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Wednesday 10.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Thursday 11.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Friday 12.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Aims, contents and method of the course

Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods: Practical work on computer

Assessment and permitted materials

The following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.

Examination topics

Contents of course

Group 2

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

Thursday 07.10. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
Monday 15.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Tuesday 16.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Wednesday 17.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Thursday 18.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Friday 19.11. 09:00 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Aims, contents and method of the course

Aims:
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer

Assessment and permitted materials

Aktive Teilnahme und Lösung von Aufgaben Versuche, schriftliches Protokoll und Abschlussprüfung.

Examination topics

Contents of the course

Group 3

max. 18 participants
Language: English
LMS: Moodle

Lecturers

Classes (iCal) - next class is marked with N

see german version

Thursday 07.10. 12:00 - 13:00 BZB/Seminarraum 1/2, 6.Ebene 6.501/6.504, Dr.-Bohr-Gasse 9, 1030 Wien
Tuesday 14.12. 08:55 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Wednesday 15.12. 08:55 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Thursday 16.12. 08:55 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien
Friday 17.12. 08:55 - 17:00 BZB/EDV-Raum, 6.Ebene 6.105, Dr.-Bohrgasse 9, 1030 Wien

Aims, contents and method of the course

Aims:
Acquirement of skills for the use of databases for genome, DNA, RNA and protein sequences. Ability to analyze these sequences for solving basic questions in the molecular biology research.
Content:
Search and retrieval of sequences; homology analysis and sequence comparison; identification of protein domains using multiple sequence alignment; in silico plasmid cloning, design of CRIPSR/Cas9-mediated genome editing; primer design for qPCR and PCR; analysis of qPCR data; protein structures
Methods:
Practical work on computer

Assessment and permitted materials

The following aspects are evaluated: active participation in the course, results of daily tasks, written report, final exam.

Examination topics

Contents of the course

Information

Minimum requirements and assessment criteria

Evaluation of active participation, protocol and final exam
Key for the final grade: active participation 25%, protocol 25%, final exam 50%
Each of the evaluated parts must be completed with a positive grade.

Reading list

Course program and documentation in Moodle. Original publications on the web pages of the databases and web-based services.

Association in the course directory

MMB I-2, MMB II-2, MMB III-2, MMB W-2, MGE III-1, MGE III-2, MMEI III

Last modified: Mo 11.10.2021 10:50