Universität Wien

301590 VU Fundamental Bioinformatics (2021W)

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
MIXED
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 102 participants
Language: German

Lecturers

Classes (iCal) - next class is marked with N

see german version

  • Monday 04.10. 09:45 - 13:00 Hybride Lehre
  • Monday 11.10. 09:45 - 13:00 Hybride Lehre
  • Monday 18.10. 09:45 - 13:00 Hybride Lehre
  • Monday 25.10. 09:45 - 13:00 Hybride Lehre
  • Monday 08.11. 09:45 - 13:00 Hybride Lehre
  • Monday 15.11. 09:45 - 13:00 Hybride Lehre
  • Monday 29.11. 08:00 - 09:30 Audimax Zentrum für Translationswissenschaft, Gymnasiumstraße 50
  • Monday 29.11. 09:45 - 13:00 Hybride Lehre
  • Monday 06.12. 09:45 - 13:00 Hybride Lehre
  • Monday 13.12. 09:45 - 13:00 Hybride Lehre
  • Monday 10.01. 09:45 - 13:00 Hybride Lehre
  • Monday 17.01. 09:45 - 13:00 Hybride Lehre
  • Monday 24.01. 09:45 - 13:00 Hybride Lehre
  • Monday 31.01. 11:45 - 13:00 Audimax Zentrum für Translationswissenschaft, Gymnasiumstraße 50

Information

Aims, contents and method of the course

Introduction to basic bioinformatical algorithms, in particular sequence
analysis methods.
sequence similarity; dynamic programming; alignment algorithms
(Needleman-Wunsch, Smith-Waterman, Gotoh, BLAST and FASTA);
multiple alignments; clustering and phylogeny reconstruction; RNA secondary
structures.
Course material: Lecture notes
Grading: Home assignments and tests

Assessment and permitted materials

Home assignments and 2 written tests
Permitted materials for tests: Calculator

Minimum requirements and assessment criteria

Understanding basic algorithms for sequence analysis as well as selected
algorithms for phylogeny reconstruction and structure prediction.
Assessment: Weighted average of grades on home assignments and tests

Examination topics

Content of lectures and slides

Reading list

Association in the course directory

BMB 7, BMG 7

Last modified: Fr 12.05.2023 00:24