Universität Wien

550001 UE Sequencing data analysis and genomics (2024W)

2.00 ECTS (1.00 SWS), SPL 55 - Doktoratsstudium Biologie mit Schwerpunkt Ökologie und Evolution
Continuous assessment of course work
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 20 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

  • Monday 10.02. 09:45 - 13:00 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Thursday 13.02. 09:45 - 13:00 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Monday 17.02. 09:45 - 13:00 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Thursday 20.02. 09:45 - 11:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1

Information

Aims, contents and method of the course

Practical course on genomics, focused on ancient DNA as well as human and mammalian sequencing data. We will use public data from modern and ancient genomes, filter and analyse this data using common tools, and perform common analysis tasks.
This would involve the processing and QC of sequencing and genotype data, as well as an introduction to the analysis of population relationships (using f-statistics and PCA). All participants will work in an interactive session, either on their own laptop or a PC in the lecture room. Basic knowledge on using the command line interface and bash would be required.

Assessment and permitted materials

Assessment involves solving an analysis task during the last session.

Minimum requirements and assessment criteria

Attending the practical course is required. The analysis task will be evaluated.

Examination topics

The analysis task will be closely related to the content of the course.

Reading list

A github repository with all necessary information will be provided.

Association in the course directory

PhD

Last modified: Fr 20.12.2024 09:47