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570002 WS Data Management in Bioinformatics (2021W)
3.00 ECTS (1.50 SWS), SPL 57 - Doktoratsstudium Biologie mit Schwerpunkt Mikrobiologie und Umweltsyste
Continuous assessment of course work
Labels
REMOTE
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 09.09.2021 08:00 to Th 23.09.2021 18:00
- Deregistration possible until Su 31.10.2021 18:00
Details
max. 15 participants
Language: English
Lecturers
Classes (iCal) - next class is marked with N
Begin: 10.11.2021, 9:00 a.m.
10.11.2021, 9:00 - 16:00 The course will be held in-person if possible.
11.11.2021, 9:00 - 16:00 The course will be held in-person if possible.
12.11.2021, 9:00 - 16:00 The course will be held in-person if possible.
- Wednesday 10.11. 09:00 - 15:55 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
- Friday 12.11. 09:00 - 16:00 Seminarraum 2.1, Biologie Djerassiplatz 1, 2.129, Ebene 2
Information
Aims, contents and method of the course
Assessment and permitted materials
Active and continuous participation in class.
Minimum requirements and assessment criteria
Presence and participation is mandatory.Prerequisites: A basic understanding of bioinformatic work (ssh, Linux, bash) is required to join this class. An ssh client is required on the student’s computer. Bring your laptop.
Examination topics
There will be no exam. Evaluation is based on participation in class.
Reading list
Association in the course directory
PhD
Last modified: Tu 24.01.2023 00:31
- Command line (bash) tips and tricks
- Code and data management using the version control software git and website GitHub
- Reproducibility and documentation of analyses (e.g. R markdown, Jupyter Notebook, snakemake)