Universität Wien

300043 PP Script Programming in genome analysis (2022S)

common script languages for the analysis of sequence data

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Prüfungsimmanente Lehrveranstaltung
Moodle

An/Abmeldung

Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").

Details

max. 20 Teilnehmer*innen
Sprache: Englisch

Lehrende

Termine (iCal) - nächster Termin ist mit N markiert

Preliminary discussion on 3.3.2022 at 10:00 via zoom conference

  • Donnerstag 03.03. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 10.03. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 17.03. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 24.03. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 31.03. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 07.04. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 28.04. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 05.05. 09:45 - 13:00 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Donnerstag 12.05. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 19.05. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 02.06. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 09.06. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 23.06. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
  • Donnerstag 30.06. 09:45 - 13:00 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1

Information

Ziele, Inhalte und Methode der Lehrveranstaltung

In this practical course, students will learn the most common script languages used in bioinformatics. This will include basic setup of the languages and elementary functions such as data types, assignments, flow control, functions and procedures, debugging. More applied uses like sorting and searching, finding and using existing programming libraries, automating external programmes and web services and parsing results will be used. A notebook is needed (a few can be borrowed in the course)

Art der Leistungskontrolle und erlaubte Hilfsmittel

Weekly exercises that have to be handed in for grading

Mindestanforderungen und Beurteilungsmaßstab

After the course, the students will know principles and techniques for construction of simple programs for solving problems in bioinformatics, using a common scripting programming language. The participants will have practical experience with implementation of text processing and parsing as well as communication with external programs from within a common scripting programming language. The method of work at the course will also train the participants to plan and complete projects.

Prüfungsstoff

The course will be in the form of lectures, followed by mandatory individual exercises.

Literatur

Zuordnung im Vorlesungsverzeichnis

BOE 13, BBO 10

Letzte Änderung: Mo 23.01.2023 14:09